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acss2.2.L acyl-CoA synthetase short-chain family member 2, gene 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443879, updated on 18-Sep-2024

Summary

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Official Symbol
acss2.2.L
Official Full Name
acyl-CoA synthetase short-chain family member 2, gene 2 L homeolog
Primary source
Xenbase:XB-GENE-5917001
Locus tag
XELAEV_18031850mg
See related
EnsemblRapid:ENSXLAG00005010233
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
acs; acsa; acas2; acecs; acss2; acss2.2
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Genomic context

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See acss2.2.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (111411225..111446265)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (104366743..104402301)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene adenomatosis polyposis coli down-regulated 1 L homeolog Neighboring gene uncharacterized LOC108719197 Neighboring gene microtubule crosslinking factor 1 L homeolog Neighboring gene RAB12, member RAS oncogene family L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80104

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables acid-thiol ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables propionate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
acyl-CoA synthetase short-chain family member 2, gene 2 L homeolog
NP_001085453.1
XP_018121927.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091984.1 → NP_001085453.1  acyl-CoA synthetase short-chain family member 2, gene 2 L homeolog

    See identical proteins and their annotated locations for NP_001085453.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072788
    UniProtKB/TrEMBL
    A0A974CL34, Q6GQF6
    Related
    ENSXLAP00005030149.1, ENSXLAT00005030905.1
    Conserved Domains (2) summary
    cd05966
    Location:42 → 664
    ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
    PRK00174
    Location:20 → 675
    PRK00174; acetyl-CoA synthetase; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    111411225..111446265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266438.2 → XP_018121927.1  acyl-CoA synthetase short-chain family member 2, gene 2 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FYI4, A0A974CL34, A0A974CQP8
Nucleotide Protein Strain
Heading Accession and Version

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