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copz1.L COPI coat complex subunit zeta 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443876, updated on 4-Nov-2024

Summary

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Official Symbol
copz1.L
Official Full Name
COPI coat complex subunit zeta 1 L homeolog
Primary source
Xenbase:XB-GENE-6251726
Locus tag
XELAEV_18013551mg
See related
EnsemblRapid:ENSXLAG00005006062 AllianceGenome:Xenbase:XB-GENE-6251726
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
copz; copz1; copz1-a; zeta1-cop
Summary
Predicted to act upstream of or within intra-Golgi vesicle-mediated transport; intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in musculoskeletal system. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See copz1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (153645249..153661938, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (147732971..147749792, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385A L homeolog Neighboring gene G protein-coupled receptor 84 L homeolog Neighboring gene nuclear factor, erythroid 2 L homeolog Neighboring gene heterogeneous nuclear ribonucleoprotein A1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80093

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in COPI-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
COPI coat complex subunit zeta 1 L homeolog
Names
coatomer protein complex subunit zeta 1 L homeolog
coatomer protein complex, subunit zeta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091981.1 → NP_001085450.1  COPI coat complex subunit zeta 1 L homeolog

    See identical proteins and their annotated locations for NP_001085450.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072784
    UniProtKB/TrEMBL
    A0A974DRI7, Q6GQG0, Q801P3
    Related
    ENSXLAP00005018126.1, ENSXLAT00005018422.1
    Conserved Domains (1) summary
    cd14829
    Location:14 → 145
    Zeta-COP; zeta subunit of the F-COPI complex

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    153645249..153661938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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