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sh3glb1.S SH3 domain GRB2 like, endophilin B1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443857, updated on 17-Aug-2024

Summary

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Official Symbol
sh3glb1.S
Official Full Name
SH3 domain GRB2 like, endophilin B1 S homeolog
Primary source
Xenbase:XB-GENE-971933
Locus tag
XELAEV_18025421mg
See related
EnsemblRapid:ENSXLAG00005008441
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sh3glb1
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Genomic context

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Location:
chromosome: 4S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (86056929..86090597, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (79726451..79757744, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate 2-O-sulfotransferase 1 S homeolog Neighboring gene selenoprotein F S homeolog Neighboring gene chloride channel accessory 3, pseudogene S homeolog Neighboring gene kelch like family member 20 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC79086

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SH3 domain GRB2 like, endophilin B1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091962.1 → NP_001085431.1  SH3 domain GRB2 like, endophilin B1 S homeolog

    See identical proteins and their annotated locations for NP_001085431.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072737
    UniProtKB/TrEMBL
    A0A974D279, Q6GQK5
    Related
    ENSXLAP00005024451.1, ENSXLAT00005025159.1
    Conserved Domains (2) summary
    cd07616
    Location:21 → 249
    BAR_Endophilin_B1; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1
    cd11945
    Location:299 → 359
    SH3_Endophilin_B1; Src homology 3 domain of Endophilin-B1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    86056929..86090597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041591302.1 → XP_041447236.1  SH3 domain GRB2 like, endophilin B1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1N0I5
    Conserved Domains (2) summary
    cd11945
    Location:320 → 380
    SH3_Endophilin_B1; Src homology 3 domain of Endophilin-B1
    cl12013
    Location:21 → 270
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein Strain
Heading Accession and Version

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