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MGC82347 MGC82347 protein [ Xenopus laevis (African clawed frog) ]

Gene ID: 443829, updated on 18-Aug-2023

Summary

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Gene symbol
MGC82347
Gene description
MGC82347 protein
Locus tag
XELAEV_18024367mg
See related
EnsemblRapid:ENSXLAG00005006298
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See MGC82347 in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (7831574..7850979)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (7664328..7683804)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene troponin I2, fast skeletal type S homeolog Neighboring gene synaptotagmin-1 Neighboring gene cathepsin D S homeolog Neighboring gene interferon induced transmembrane protein 10 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Cathepsin D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091934.1 → NP_001085403.1  Cathepsin D precursor

    See identical proteins and their annotated locations for NP_001085403.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072252
    UniProtKB/TrEMBL
    A0A974HL67, Q6INM6
    Related
    ENSXLAP00005018758.1, ENSXLAT00005019093.1
    Conserved Domains (3) summary
    cd05490
    Location:75 → 399
    Cathepsin_D2; Cathepsin_D2, pepsin family of proteinases
    pfam00026
    Location:80 → 399
    Asp; Eukaryotic aspartyl protease
    pfam07966
    Location:24 → 49
    A1_Propeptide; A1 Propeptide

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7831574..7850979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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