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ranbp3.L RAN binding protein 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443811, updated on 4-Nov-2024

Summary

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Official Symbol
ranbp3.L
Official Full Name
RAN binding protein 3 L homeolog
Primary source
Xenbase:XB-GENE-495077
Locus tag
XELAEV_18006303mg
See related
EnsemblRapid:ENSXLAG00005015381 AllianceGenome:Xenbase:XB-GENE-495077
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ranbp3
Summary
Predicted to enable GTPase activator activity. Predicted to act upstream of or within protein export from nucleus. Predicted to be located in cytoplasm. Predicted to be part of nuclear pore. Orthologous to human RANBP3 (RAN binding protein 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ranbp3.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (110893209..110935672, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (98842845..98887665, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene vimentin type intermediate filament associated coiled-coil protein L homeolog Neighboring gene calcyphosine L homeolog Neighboring gene solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 L homeolog Neighboring gene CD209 antigen-like protein E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RanBP3 enhances nuclear export of active (beta)-catenin independently of CRM1. Hendriksen J, et al. J Cell Biol, 2005 Dec 5. PMID 16314428, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein export from nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RAN binding protein 3 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091916.1 → NP_001085385.1  RAN binding protein 3 L homeolog

    See identical proteins and their annotated locations for NP_001085385.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072034
    UniProtKB/TrEMBL
    A0A974DYE0, Q6IP83
    Related
    ENSXLAP00005045128.1, ENSXLAT00005046227.1
    Conserved Domains (1) summary
    cd13180
    Location:343 → 458
    RanBD_RanBP3; Ran-binding protein 3 Ran-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    110893209..110935672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018244919.2 → XP_018100408.1  RAN binding protein 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0U3K7
    Related
    ENSXLAP00005045122.1, ENSXLAT00005046221.1

  2. XM_041580004.1 → XP_041435938.1  RAN binding protein 3 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1M2K9
    Related
    ENSXLAP00005045144.1, ENSXLAT00005046244.1
    Conserved Domains (1) summary
    cd13180
    Location:271 → 386
    RanBD_RanBP3; Ran-binding protein 3 Ran-binding domain

  3. XM_041580005.1 → XP_041435939.1  RAN binding protein 3 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1M2M7
    Conserved Domains (1) summary
    cd13180
    Location:256 → 371
    RanBD_RanBP3; Ran-binding protein 3 Ran-binding domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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