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srsf5a.S serine/arginine-rich splicing factor 5 alpha S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443807, updated on 17-Aug-2024

Summary

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Official Symbol
srsf5a.S
Official Full Name
serine/arginine-rich splicing factor 5 alpha S homeolog
Primary source
Xenbase:XB-GENE-6251747
Locus tag
XELAEV_18041035mg
See related
EnsemblRapid:ENSXLAG00005022661
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sfrs4; srp75; srsf4; krt5.1; krt5.1a; srsf4.L
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Genomic context

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See srsf5a.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (2824045..2844616)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (2811510..2850536)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 5 S homeolog Neighboring gene actinin alpha 1 S homeolog Neighboring gene NFKB inhibitor alpha S homeolog Neighboring gene proteasome subunit alpha 6 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/arginine-rich splicing factor 4; serine/arginine-rich splicing factor 5 alpha S homeolog
Names
keratin 5, gene 1 a
serine/arginine-rich splicing factor 4 L homeolog
splicing factor, arginine/serine-rich 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2824045..2844616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575260.1 → XP_041431194.1  serine/arginine-rich splicing factor 4 isoform X3

    UniProtKB/TrEMBL
    A0A8J1LPP3, Q6GQZ2
    Related
    ENSXLAP00005066728.1, ENSXLAT00005068252.1
    Conserved Domains (1) summary
    smart00360
    Location:5 → 69
    RRM; RNA recognition motif

  2. XM_041575259.1 → XP_041431193.1  serine/arginine-rich splicing factor 4 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LNN5, Q6GQZ2
    Conserved Domains (1) summary
    smart00360
    Location:5 → 69
    RRM; RNA recognition motif

  3. XM_041575258.1 → XP_041431192.1  serine/arginine-rich splicing factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A1L8EZK9, A0A974C1N2, Q6GQZ2
    Related
    ENSXLAP00005066772.1, ENSXLAT00005068299.1
    Conserved Domains (2) summary
    cd12337
    Location:5 → 73
    RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:114 → 185
    RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091912.1: Suppressed sequence

    Description
    NM_001091912.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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