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tax1bp3.S Tax1 binding protein 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443803, updated on 4-Nov-2024

Summary

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Official Symbol
tax1bp3.S
Official Full Name
Tax1 binding protein 3 S homeolog
Primary source
Xenbase:XB-GENE-17339112
Locus tag
XELAEV_18014203mg
See related
EnsemblRapid:ENSXLAG00005027213 AllianceGenome:Xenbase:XB-GENE-17339112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to act upstream of or within several processes, including Wnt signaling pathway; establishment or maintenance of epithelial cell apical/basal polarity; and receptor clustering. Predicted to be located in several cellular components, including basolateral plasma membrane; cell junction; and nucleus. Orthologous to human TAX1BP3 (Tax1 binding protein 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tax1bp3.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (7034912..7049903)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (7053015..7068118)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand gated ion channel, 5 S homeolog Neighboring gene ER membrane protein complex subunit 6 S homeolog Neighboring gene sedoheptulokinase S homeolog Neighboring gene transient receptor potential cation channel, subfamily V, member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83163

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within receptor clustering IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within receptor localization to synapse IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cell junction IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Tax1 binding protein 3 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091908.1 → NP_001085377.1  Tax1 binding protein 3 S homeolog

    See identical proteins and their annotated locations for NP_001085377.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071154
    UniProtKB/TrEMBL
    A0A974DGE4, Q6AZS5, Q6DKL6
    Related
    ENSXLAP00005080931.1, ENSXLAT00005082541.1
    Conserved Domains (1) summary
    cd00992
    Location:13 → 109
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7034912..7049903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials