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pabpc1l.L poly(A) binding protein, cytoplasmic 1-like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443777, updated on 18-Sep-2024

Summary

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Official Symbol
pabpc1l.L
Official Full Name
poly(A) binding protein, cytoplasmic 1-like L homeolog
Primary source
Xenbase:XB-GENE-6251876
Locus tag
XELAEV_18043239mg
See related
EnsemblRapid:ENSXLAG00005027179
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
epab; epabp; epabp-b; pabpc1l; pabpc1l1; pabpc1l-a; pabpc1l-b; pabpc1l.S
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Genomic context

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See pabpc1l.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (3761752..3778333)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (3736079..3752636)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene regulating synaptic membrane exocytosis 4 L homeolog Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta L homeolog Neighboring gene serine/threonine kinase 4 L homeolog Neighboring gene potassium voltage-gated channel, modifier subfamily S, member 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  2. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81363

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables eukaryotic initiation factor 4G binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chordate embryonic development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA stabilization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within negative regulation of nuclear-transcribed mRNA poly(A) tail shortening ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
embryonic polyadenylate-binding protein B
Names
ePAB-B
embryonic poly(A)-binding protein B
poly(A) binding protein, cytoplasmic 1-like S homeolog
xePABP-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091882.1 → NP_001085351.1  embryonic polyadenylate-binding protein B

    See identical proteins and their annotated locations for NP_001085351.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071118
    UniProtKB/Swiss-Prot
    Q6GR16
    UniProtKB/TrEMBL
    A0A974BSE6
    Related
    ENSXLAP00005080797.1, ENSXLAT00005082396.1
    Conserved Domains (6) summary
    TIGR01628
    Location:11 → 612
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:544 → 611
    PABP; Poly-adenylate binding protein, unique domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3761752..3778333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234295.2 → XP_018089784.1  embryonic polyadenylate-binding protein B isoform X1

    UniProtKB/TrEMBL
    A0A1L8ES55, A0A974BSE6, A0A974BWL7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GR16.1 GenPept UniProtKB/Swiss-Prot:Q6GR16

Gene LinkOut

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Molecular Biology Databases
Research Materials