abitram.S actin binding transcription modulator S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: abitram.S
Official Full Name: actin binding transcription modulator S homeolog
Primary source: Xenbase:XB-GENE-6251882
Locus tag: XELAEV_18033346mg
See related: EnsemblRapid:ENSXLAG00005004439 AllianceGenome:Xenbase:XB-GENE-6251882
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cg-8; c9orf6; abitram; fam206a; simiate; fam206a.S
Summary: Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to act upstream of or within dendrite morphogenesis; regulation of actin filament polymerization; and regulation of filopodium assembly. Predicted to be located in filopodium tip; growth cone; and lamellipodium. Orthologous to human ABITRAM (actin binding transcription modulator). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 6S

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6S	NC_054382.1 (62296198..62315078)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6S	NC_030735.1 (58090067..58108922)

Chromosome 6S - NC_054382.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables actin filament binding	IEA Inferred from Electronic Annotation more info
enables actin monomer binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within dendrite morphogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within dendrite morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of actin filament polymerization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of actin filament polymerization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of filopodium assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of filopodium assembly	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in dendrite	IEA Inferred from Electronic Annotation more info
located_in filopodium tip	IEA Inferred from Electronic Annotation more info
located_in filopodium tip	ISS Inferred from Sequence or Structural Similarity more info
located_in growth cone	IEA Inferred from Electronic Annotation more info
located_in growth cone	ISS Inferred from Sequence or Structural Similarity more info
located_in lamellipodium	IEA Inferred from Electronic Annotation more info
located_in lamellipodium	ISS Inferred from Sequence or Structural Similarity more info
located_in nuclear speck	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein Abitram

Names: actin-binding transcription modulator; family with sequence similarity 206 member A S homeolog; family with sequence similarity 206, member A; protein FAM206A; protein Simiate

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091867.1 → NP_001085336.1 protein Abitram

See identical proteins and their annotated locations for NP_001085336.1

Status: PROVISIONAL

Source sequence(s)

BC071099

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

62296198..62315078

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018268692.2 → XP_018124181.1 protein Abitram isoform X1

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Related

ENSXLAP00005013248.1, ENSXLAT00005013428.1

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...
XM_018268693.2 → XP_018124182.1 protein Abitram isoform X1

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...
XM_041567158.1 → XP_041423092.1 protein Abitram isoform X1

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...
XM_041567159.1 → XP_041423093.1 protein Abitram isoform X1

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...
XM_041567160.1 → XP_041423094.1 protein Abitram isoform X1

UniProtKB/Swiss-Prot

Q6GR35

UniProtKB/TrEMBL

A0A1L8FS20, A0A974HDX6

Conserved Domains (1) summary

cl11404
Location:108 → 170

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...