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XRCC6P5 X-ray repair cross complementing 6 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 442459, updated on 10-Oct-2023

Summary

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Official Symbol
XRCC6P5provided by HGNC
Official Full Name
X-ray repair cross complementing 6 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:45187
See related
Ensembl:ENSG00000215070 AllianceGenome:HGNC:45187
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See XRCC6P5 in Genome Data Viewer
Location:
Xq22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (99719130..99721206, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (98161388..98163464, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (98974128..98976204, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3077 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:98111402-98111562 Neighboring gene NANOG hESC enhancer GRCh37_chrX:98340142-98340649 Neighboring gene TEX101 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:99004673-99005174 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:99090809-99091310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:99194631-99195245 Neighboring gene B3GNT2 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:99325109-99326054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99389825-99390366 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99390367-99390907 Neighboring gene CTDSPL2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The association of DNA repair gene polymorphisms with the development and progression of renal cell carcinoma. Sakano S, et al. Ann Oncol, 2007 Nov. PMID 17712032

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The association between DNA repair gene polymorphism and the genetic susceptibility and progression of renal cell carcinoma are not specific.
    Title: The association of DNA repair gene polymorphisms with the development and progression of renal cell carcinoma.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • DNA repair protein
  • X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5
  • X-ray repair complementing defective repair pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_061628.2 

    Range
    101..2177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    99719130..99721206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    98161388..98163464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001127438.1: Suppressed sequence

    Description
    NM_001127438.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.

  2. NR_024608.1: Suppressed sequence

    Description
    NR_024608.1: This RefSeq was removed because there is insufficient evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

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Chemical Information
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