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PTPN11P5 PTPN11 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 442113, updated on 10-Oct-2023

Summary

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Official Symbol
PTPN11P5provided by HGNC
Official Full Name
PTPN11 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:56469
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q21.22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (82580519..82581384, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (85909746..85910611, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (83501672..83502537, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150C Neighboring gene ribosomal protein L7a pseudogene 26 Neighboring gene ribosomal protein S6 pseudogene Neighboring gene Sharpr-MPRA regulatory region 10449 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:83482867-83483366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83506651-83507180 Neighboring gene Sharpr-MPRA regulatory region 8782 Neighboring gene long intergenic non-protein coding RNA 575 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83561231-83561730 Neighboring gene stearoyl-CoA desaturase 5 Neighboring gene SLC66A2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • protein tyrosine phosphatase non-receptor type 11 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022018.2 

    Range
    101..966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    82580519..82581384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    85909746..85910611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials