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SLC25A38P1 SLC25A38 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 441915, updated on 17-Sep-2024

Summary

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Official Symbol
SLC25A38P1provided by HGNC
Official Full Name
SLC25A38 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:43858
See related
AllianceGenome:HGNC:43858
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SLC25A38P1 in Genome Data Viewer
Location:
1q24.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (172748252..172750171)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (172106327..172108246)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (172717392..172719311)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 693, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:172607677-172608876 Neighboring gene Fas ligand Neighboring gene Sharpr-MPRA regulatory region 4605 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1553 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2095 Neighboring gene uncharacterized LOC107985225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2096 Neighboring gene uncharacterized LOC105371618

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple common variants for celiac disease influencing immune gene expression. Dubois PC, et al. Nat Genet, 2010 Apr. PMID 20190752, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • solute carrier family 25 member 38 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006910.1 

    Range
    101..2020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    172748252..172750171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    172106327..172108246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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