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LINC02181 long intergenic non-protein coding RNA 2181 [ Homo sapiens (human) ]

Gene ID: 440390, updated on 10-Oct-2023

Summary

Official Symbol
LINC02181provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2181provided by HGNC
Primary source
HGNC:HGNC:53043
See related
Ensembl:ENSG00000232190 AllianceGenome:HGNC:53043
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
16q24.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (87057784..87063991)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (93127927..93134145)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (87091390..87097597)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984819 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86806242-86806760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86806761-86807277 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:86834327-86835266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86857754-86858402 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86860345-86860992 Neighboring gene uncharacterized LOC124903746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86883968-86884468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86902487-86902990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86902991-86903494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86928957-86929739 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86934630-86935133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86935134-86935636 Neighboring gene VISTA enhancer hs1613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86958578-86959522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86959523-86960466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86989033-86989533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87002635-87003135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87012327-87012827 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87013951-87014452 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87046420-87046981 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87046982-87047542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87062623-87063123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87062122-87062622 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:87067292-87067465 Neighboring gene NANOG hESC enhancer GRCh37_chr16:87122126-87122775 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:87127447-87128373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87132609-87133324 Neighboring gene uncharacterized LOC105371394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87165805-87166621 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:87173746-87174945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87183708-87184208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87184209-87184709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87193649-87194198 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:87195966-87197165 Neighboring gene MPRA-validated peak2654 silencer Neighboring gene Sharpr-MPRA regulatory region 1579 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87207420-87207920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87207921-87208421 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87220006-87220856 Neighboring gene uncharacterized LOC101928708

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126008.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106745
    Related
    ENST00000430050.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    87057784..87063991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    93127927..93134145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)