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NPIPB7 nuclear pore complex interacting protein family member B7 [ Homo sapiens (human) ]

Gene ID: 440350, updated on 10-Oct-2023

Summary

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Official Symbol
NPIPB7provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member B7provided by HGNC
Primary source
HGNC:HGNC:33832
See related
Ensembl:ENSG00000233232 AllianceGenome:HGNC:33832
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIPL1; A-575C2.4; A-761H5.5
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
16p12.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (28456329..28472336, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (28737009..28778611, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (28467650..28483657, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit C like Neighboring gene cell division cycle 37 pseudogene 2 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:28459200-28460080 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7308 Neighboring gene CLN3 lysosomal/endosomal transmembrane protein, battenin Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:28503277-28504066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:28510584-28511084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:28511085-28511585 Neighboring gene apolipoprotein B receptor Neighboring gene interleukin 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. Loftus BJ, et al. Genomics, 1999 Sep 15. PMID 10493829
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear pore complex-interacting protein family member B7
Names
nuclear pore complex-interacting protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396030.1 → NP_001382959.1  nuclear pore complex-interacting protein family member B7 precursor

    Status: VALIDATED

    Source sequence(s)
    AC138894
    Consensus CDS
    CCDS92130.1
    UniProtKB/Swiss-Prot
    E7ERT9, O75200
    UniProtKB/TrEMBL
    I3L0I5
    Related
    ENSP00000405348.1, ENST00000452313.6
    Conserved Domains (1) summary
    pfam06409
    Location:30 → 283
    NPIP; Nuclear pore complex interacting protein (NPIP)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    28456329..28472336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    28737009..28778611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_023370.2: Suppressed sequence

    Description
    NG_023370.2: This RefSeq was removed because it is now thought that this gene does encode a protein.

  2. NM_001018122.2: Suppressed sequence

    Description
    NM_001018122.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O75200.3 GenPept UniProtKB/Swiss-Prot:O75200

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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Research Materials
Miscellaneous