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GOLGA6L22 golgin A6 family like 22 [ Homo sapiens (human) ]

Gene ID: 440243, updated on 17-Sep-2024

Summary

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Official Symbol
GOLGA6L22provided by HGNC
Official Full Name
golgin A6 family like 22provided by HGNC
Primary source
HGNC:HGNC:50289
See related
Ensembl:ENSG00000277865 AllianceGenome:HGNC:50289
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 7.7) See more
Orthologs
all
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Genomic context

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See GOLGA6L22 in Genome Data Viewer
Location:
15q11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (22458903..22469226)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (20131000..20141341)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (23403870..23414193, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A8 family member E, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 545, pseudogene Neighboring gene uncharacterized LOC124900355 Neighboring gene MPHOSPH10 pseudogene 9 Neighboring gene pectinesterase inhibitor 10-like Neighboring gene HERC2 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Markers

Homology

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396956.1 → NP_001383885.1  golgin subfamily A member 6-like protein 22 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC100757
    Consensus CDS
    CCDS91962.1
    UniProtKB/Swiss-Prot
    A0A087X0V3, H0YM25
    Related
    ENSP00000483673.2, ENST00000622895.2
    Conserved Domains (3) summary
    PTZ00121
    Location:213 → 747
    PTZ00121; MAEBL; Provisional
    smart00818
    Location:6 → 71
    Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
    TIGR02169
    Location:102 → 277
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. NM_001396957.1 → NP_001383886.1  golgin subfamily A member 6-like protein 22 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC100757

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    22458903..22469226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    3353066..3361572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047443235.1 → XP_047299191.1  golgin subfamily A member 6-like protein 22 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    20131000..20141341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001271664.3: Suppressed sequence

    Description
    NM_001271664.3: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H0YM25.3 GenPept UniProtKB/Swiss-Prot:H0YM25

Gene LinkOut

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