kctd9b potassium channel tetramerization domain containing 9b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: kctd9bprovided by ZNC
Official Full Name: potassium channel tetramerization domain containing 9bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-238
See related: Ensembl:ENSDARG00000010603 AllianceGenome:ZFIN:ZDB-GENE-040718-238
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: kctd9; zgc:101020
Summary: Predicted to act upstream of or within ion transport and protein homooligomerization. Is expressed in myotome. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 10

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (42542570..42555818)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (42714190..42727438)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within monoatomic ion transmembrane transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein homooligomerization	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: BTB/POZ domain-containing protein KCTD9b

Names: potassium channel tetramerisation domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002738.1 → NP_001002738.1 BTB/POZ domain-containing protein KCTD9b

See identical proteins and their annotated locations for NP_001002738.1

Status: PROVISIONAL

Source sequence(s)

BC076416

UniProtKB/TrEMBL

Q6DGD4

Related

ENSDARP00000027995.8, ENSDART00000005496.9

Conserved Domains (5) summary

smart00225
Location:91 → 185

BTB; Broad-Complex, Tramtrack and Bric a brac

pfam00805
Location:243 → 280

Pentapeptide; Pentapeptide repeats (8 copies)

pfam11834
Location:2 → 64

KHA; KHA, dimerization domain of potassium ion channel

pfam13599
Location:310 → 384

Pentapeptide_4; Pentapeptide repeats (9 copies)

cl02518
Location:92 → 181

BTB; BTB/POZ domain