trappc5 trafficking protein particle complex subunit 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: trappc5provided by ZNC
Official Full Name: trafficking protein particle complex subunit 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-185
See related: Ensembl:ENSDARG00000026068 AllianceGenome:ZFIN:ZDB-GENE-040718-185
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:92866; wu:fc34a11
Summary: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (45663749..45669444)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (44971958..44977642)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

AI544899 (e-PCR)
- UniSTS:205653

fc34a11.x1 (e-PCR)
- UniSTS:188024

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within Golgi vesicle transport	IEA Inferred from Electronic Annotation more info
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
part_of TRAPP complex	IEA Inferred from Electronic Annotation more info
part_of TRAPPI protein complex	IBA Inferred from Biological aspect of Ancestor more info
part_of TRAPPII protein complex	IBA Inferred from Biological aspect of Ancestor more info
part_of TRAPPIII protein complex	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: trafficking protein particle complex subunit 5

Names: trafficking protein particle complex 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.