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mydgf myeloid-derived growth factor [ Danio rerio (zebrafish) ]

Gene ID: 436753, updated on 2-Nov-2024

Summary

Official Symbol
mydgfprovided by ZNC
Official Full Name
myeloid-derived growth factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-183
See related
Ensembl:ENSDARG00000071679 AllianceGenome:ZFIN:ZDB-GENE-040718-183
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92871
Summary
Predicted to be involved in positive regulation of angiogenesis and positive regulation of endothelial cell proliferation. Predicted to be active in extracellular space. Orthologous to human MYDGF (myeloid derived growth factor). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See mydgf in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (5135181..5145469)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (4750818..4761094)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene muscle-specific beta 1 integrin binding protein Neighboring gene lysyl oxidase-like 5a Neighboring gene uncharacterized LOC101884287 Neighboring gene tumor necrosis factor, alpha-induced protein 8-like 1 Neighboring gene ceramide synthase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in positive regulation of angiogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of endothelial cell proliferation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
myeloid-derived growth factor
Names
UPF0556 protein C19orf10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002480.2NP_001002480.1  myeloid-derived growth factor precursor

    See identical proteins and their annotated locations for NP_001002480.1

    Status: VALIDATED

    Source sequence(s)
    CR936300
    UniProtKB/TrEMBL
    A0A8M1N0Q9, Q6DGL1
    Related
    ENSDARP00000096934.3, ENSDART00000106156.5
    Conserved Domains (1) summary
    pfam10572
    Location:21164
    UPF0556; uncharacterized protein family UPF0556

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    5135181..5145469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)