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fam189a1 family with sequence similarity 189 member A1 [ Danio rerio (zebrafish) ]

Gene ID: 436705, updated on 2-Nov-2024

Summary

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Official Symbol
fam189a1provided by ZNC
Official Full Name
family with sequence similarity 189 member A1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-129
See related
Ensembl:ENSDARG00000053380 AllianceGenome:ZFIN:ZDB-GENE-040718-129
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92649
Summary
Predicted to be located in membrane. Orthologous to human ENTREP2 (endosomal transmembrane epsin interactor 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See fam189a1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (31145352..31336239)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (30874007..31065085)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:dkey-1h4.4 Neighboring gene telomere repeat binding bouquet formation protein 2 Neighboring gene tight junction protein 1a Neighboring gene uncharacterized LOC103911386 Neighboring gene golgi membrane protein 2 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
family with sequence similarity 189 member A1; protein ENTREP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    31145352..31336239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003198968.6 → XP_003199016.1  protein ENTREP2 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IHQ2, A0A8M1RNH6
    Related
    ENSDARP00000135046.1, ENSDART00000169462.3
    Conserved Domains (1) summary
    pfam04103
    Location:36 → 200
    CD20; CD20-like family

  2. XM_068222641.1 → XP_068078742.1  protein ENTREP2 isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001002432.1: Suppressed sequence

    Description
    NM_001002432.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: FAM189B (GeneID:10712).
Nucleotide Protein
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