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CG7896 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43552, updated on 18-Sep-2024

Summary

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Official Symbol
CG7896provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039728
Locus tag
Dmel_CG7896
See related
AllianceGenome:FB:FBgn0039728
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CT23878; Dmel\CG7896; tartan/capricious-like
Summary
Is expressed in spermatozoon. Orthologous to human LRRN4 (leucine rich repeat neuronal 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG7896 in Genome Data Viewer
Location:
99D1-99D1; 3-100 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29983426..29990785)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (25809148..25816507)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Vacuolar protein sorting 13B Neighboring gene Tachykinin-like receptor at 99D Neighboring gene Acid phosphatase 1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Drosophila convoluted/dALS is an essential gene required for tracheal tube morphogenesis and apical matrix organization. Swanson LE, et al. Genetics, 2009 Apr. PMID 19171940, Free PMC Article
  2. Bioinformatic analysis suggests potential mechanisms underlying parasitoid venom evolution and function. Alvarado G, et al. Genomics, 2020 Mar. PMID 31247332
  3. Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos. Albright AR, et al. PLoS One, 2022. PMID 35749552, Free PMC Article
  4. Harnessing the paradoxical phenotypes of APOE ɛ2 and APOE ɛ4 to identify genetic modifiers in Alzheimer's disease. Kim YW, et al. Alzheimers Dement, 2021 May. PMID 33576571, Free PMC Article
  5. Impaired retrograde transport by the Dynein/Dynactin complex contributes to Tau-induced toxicity. Butzlaff M, et al. Hum Mol Genet, 2015 Jul 1. PMID 25794683

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG7896-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    29983426..29990785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_143497.3 → NP_651754.1  uncharacterized protein Dmel_CG7896 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651754.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E4NKH3, Q95TQ7, Q9VAD1
    Related
    FBpp0084911
    Conserved Domains (6) summary
    cd00116
    Location:273 → 535
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:477 → 497
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:524 → 547
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:884 → 925
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:328 → 388
    LRR_8; Leucine rich repeat
    cl15307
    Location:1121 → 1168
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VAD1 Q9VAD1

Gene LinkOut

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