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Atp6ap1l ATPase, H+ transporting, lysosomal accessory protein 1-like [ Mus musculus (house mouse) ]

Gene ID: 435376, updated on 2-Nov-2024

Summary

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Official Symbol
Atp6ap1lprovided by MGI
Official Full Name
ATPase, H+ transporting, lysosomal accessory protein 1-likeprovided by MGI
Primary source
MGI:MGI:3648665
See related
Ensembl:ENSMUSG00000078958 AllianceGenome:MGI:3648665
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG435376
Summary
Predicted to enable ATPase activator activity. Predicted to be involved in regulation of cellular pH. Predicted to be part of proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 39.9), frontal lobe adult (RPKM 6.1) and 1 other tissue See more
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Genomic context

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See Atp6ap1l in Genome Data Viewer
Location:
13 C3; 13 46.45 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (91031558..91053478, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (90883439..90905355, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35111 Neighboring gene STARR-seq mESC enhancer starr_35240 Neighboring gene STARR-seq mESC enhancer starr_35241 Neighboring gene STARR-seq mESC enhancer starr_35242 Neighboring gene STARR-seq mESC enhancer starr_35243 Neighboring gene STARR-seq mESC enhancer starr_35244 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E3091 Neighboring gene STARR-seq mESC enhancer starr_35246 Neighboring gene ribosomal protein S23 Neighboring gene autophagy related 10 Neighboring gene STARR-seq mESC enhancer starr_35249 Neighboring gene 40S ribosomal protein S14 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of cellular pH IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
V-type proton ATPase subunit S1-like protein
Names
Ac45-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145879.1 → NP_001139351.1  V-type proton ATPase subunit S1-like protein precursor

    Status: VALIDATED

    Source sequence(s)
    AC108947, CJ050414, CX238982
    Consensus CDS
    CCDS49325.1
    UniProtKB/TrEMBL
    A0A139ZDP1, D3Z5W0
    Related
    ENSMUSP00000105168.3, ENSMUST00000109541.4
    Conserved Domains (1) summary
    pfam01299
    Location:123 → 277
    Lamp; Lysosome-associated membrane glycoprotein (Lamp)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    91031558..91053478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517291.2 → XP_006517354.1  V-type proton ATPase subunit S1-like protein isoform X2

    Conserved Domains (1) summary
    pfam05827
    Location:46 → 186
    ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)

  2. XM_006517290.4 → XP_006517353.1  V-type proton ATPase subunit S1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A139ZDP1
    Conserved Domains (1) summary
    pfam05827
    Location:90 → 230
    ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)

  3. XM_036158087.1 → XP_036013980.1  V-type proton ATPase subunit S1-like protein isoform X3

    Conserved Domains (1) summary
    pfam05827
    Location:34 → 174
    ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)

  4. XM_036158088.1 → XP_036013981.1  V-type proton ATPase subunit S1-like protein isoform X3

    Conserved Domains (1) summary
    pfam05827
    Location:34 → 174
    ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)

  5. XM_017315542.3 → XP_017171031.1  V-type proton ATPase subunit S1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A139ZDP1
    Conserved Domains (1) summary
    pfam05827
    Location:90 → 230
    ATP-synt_S1; Vacuolar ATP synthase subunit S1 (ATP6S1)
Nucleotide Protein Strain
Heading Accession and Version

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