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LOC4352664 calcium-transporting ATPase 10, plasma membrane-type-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352664, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4352664
Gene description
calcium-transporting ATPase 10, plasma membrane-type-like
Locus tag
OSNPB_120586600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ACA10; OsACA10; OsJ_36685
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Genomic context

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See LOC4352664 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25196680..25202394)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24485299..24490984)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene transcription factor HHO6 Neighboring gene uncharacterized LOC4352662 Neighboring gene uncharacterized LOC136354502 Neighboring gene uncharacterized LOC112937458 Neighboring gene uncharacterized LOC136351213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase 10, plasma membrane-type
Names
Ca(2+)-ATPase
Calcium-transporting ATPase 10, plasma membrane-type
LOC_Os12g39660
Plastid envelope ATPase 1
calcium-transporting ATPase 1, plasma membrane-type
NP_001410529.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423600.1 → NP_001410529.1  calcium-transporting ATPase 10, plasma membrane-type

    Status: VALIDATED

    Source sequence(s)
    AK066259, CI315777, CI739287
    UniProtKB/Swiss-Prot
    A0A0P0YBR1, Q0IM87, Q2QMX9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    25196680..25202394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QMX9.1 GenPept UniProtKB/Swiss-Prot:Q2QMX9

Gene LinkOut

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Molecular Biology Databases
Research Materials