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LOC4352566 importin subunit beta-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352566, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352566
Gene description
importin subunit beta-1
Locus tag
OSNPB_120568800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4352566 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24092360..24097598)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23402586..23407854)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At2g02030 Neighboring gene CASP-like protein 4C1 Neighboring gene osmotin-like protein Neighboring gene uncharacterized LOC9267984

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of two importin-beta genes from rice. Matsuki R, et al. Plant Cell Physiol, 1998 Aug. PMID 9787463
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
importin subunit beta-1
Names
Os12g0568800
importin-beta2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24092360..24097598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764405.3 → XP_015619891.1  importin subunit beta-1

    UniProtKB/TrEMBL
    A2ZLT1, A3CIK4, Q2QNE2, Q9ZWR4
    Conserved Domains (2) summary
    COG5215
    Location:14 → 827
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:368 → 396
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials