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LOC4352560 large ribosomal subunit protein uL2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352560, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352560
Gene description
large ribosomal subunit protein uL2
Locus tag
OSNPB_120567700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4352560 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24039734..24041539)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23349983..23351827)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937403 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g51810 Neighboring gene metallothionein-like protein 4C Neighboring gene uncharacterized LOC136354605

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL2
Names
60S ribosomal protein L2
60S ribosomal protein L8
Os12g0567700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24039734..24041539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764358.3 → XP_015619844.1  large ribosomal subunit protein uL2

    UniProtKB/TrEMBL
    A2ZLS7, A3CIJ6, Q2QNF3
    Conserved Domains (1) summary
    PTZ00180
    Location:1 → 248
    PTZ00180; 60S ribosomal protein L8; Provisional
Nucleotide Protein
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