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LOC4352460 nucleoside diphosphate kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352460, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4352460
Gene description
nucleoside diphosphate kinase 1
Locus tag
OSNPB_120548300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
bip114
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Genomic context

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See LOC4352460 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (22870321..22876788)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22182878..22189398)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene condensin-2 complex subunit CAP-D3 Neighboring gene auxilin-related protein 2 Neighboring gene uncharacterized LOC107279726 Neighboring gene subtilisin-chymotrypsin inhibitor-2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside diphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in GTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoside diphosphate kinase 1
Names
BRI1-KD interacting protein 114
Os12g0548300
nucleoside diphosphate kinase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    22870321..22876788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762777.3 → XP_015618263.1  nucleoside diphosphate kinase 1

    UniProtKB/TrEMBL
    A0A0N7KU64, A3CI79, Q0IMS5
    Conserved Domains (1) summary
    cd04413
    Location:73 → 202
    NDPk_I; Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside ...
Nucleotide Protein
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