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LOC4351978 zinc finger CCCH domain-containing protein 65-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351978, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351978
Gene description
zinc finger CCCH domain-containing protein 65-like
Locus tag
OSNPB_120278800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsC3H65
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Genomic context

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See LOC4351978 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10497467..10505375, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10436109..10444021, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937360 Neighboring gene cystinosin homolog Neighboring gene uncharacterized LOC4351979 Neighboring gene DExH-box ATP-dependent RNA helicase DExH9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 65
Names
LOC_Os12g18120

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404724.1 → NP_001391653.1  zinc finger CCCH domain-containing protein 65 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK111498, CB675255, CF328850, CI269852, CI608215, CI615971
    UniProtKB/TrEMBL
    A0A8J8XCT3, B7F3T2, B9GCN1

  2. NM_001404725.1 → NP_001391654.1  zinc finger CCCH domain-containing protein 65 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK111498, CB677268, CF328850, CI269852

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    10497467..10505375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764820.3 → XP_015620306.1  zinc finger CCCH domain-containing protein 65 isoform X2

    UniProtKB/TrEMBL
    B8BP40
    Conserved Domains (1) summary
    pfam00642
    Location:266 → 292
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_015764816.3 → XP_015620302.1  zinc finger CCCH domain-containing protein 65 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0Y948, Q2QTY2, Q2QTY3, Q2QTY4
    UniProtKB/TrEMBL
    B8BP40
    Conserved Domains (2) summary
    PRK10263
    Location:330 → 486
    PRK10263; DNA translocase FtsK; Provisional
    pfam00642
    Location:286 → 312
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QTY2.1 GenPept UniProtKB/Swiss-Prot:Q2QTY2

Gene LinkOut

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Molecular Biology Databases
Research Materials