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LOC4351929 3-hydroxyisobutyryl-CoA hydrolase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351929, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351929
Gene description
3-hydroxyisobutyryl-CoA hydrolase 1
Locus tag
OSNPB_120264500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4351929 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9411165..9425838)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9350844..9365580)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene isoflavone reductase homolog Neighboring gene uncharacterized LOC9269561 Neighboring gene pinoresinol reductase 1-like Neighboring gene uncharacterized LOC107278356 Neighboring gene isoflavone reductase homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-hydroxyisobutyryl-CoA hydrolase 1
Names
Os12g0264500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    9411165..9425838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306446.1 → XP_066162543.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  2. XM_066306448.1 → XP_066162545.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  3. XM_066306449.1 → XP_066162546.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  4. XM_015764212.3 → XP_015619698.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

    UniProtKB/TrEMBL
    H2KWY2
    Conserved Domains (1) summary
    cl23717
    Location:2 → 380
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  5. XM_015764218.3 → XP_015619704.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

    UniProtKB/TrEMBL
    H2KWY2, Q2QUG2
    Conserved Domains (2) summary
    PRK05617
    Location:4 → 346
    PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
    cl23717
    Location:2 → 373
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  6. XM_066306444.1 → XP_066162541.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  7. XM_066306450.1 → XP_066162547.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

    UniProtKB/TrEMBL
    Q2QUG2

  8. XM_066306447.1 → XP_066162544.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  9. XM_066306451.1 → XP_066162548.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

    UniProtKB/TrEMBL
    Q2QUG2

  10. XM_015764207.3 → XP_015619693.2  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X1

  11. XM_015764208.3 → XP_015619694.2  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X2

  12. XM_066306445.1 → XP_066162542.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X4

  13. XM_015764219.3 → XP_015619705.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X6

    UniProtKB/TrEMBL
    H2KWY2, Q2QUG2
    Conserved Domains (2) summary
    PRK05617
    Location:4 → 346
    PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
    cl23717
    Location:2 → 373
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  14. XM_015764217.3 → XP_015619703.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X5

    UniProtKB/TrEMBL
    B9FN90, H2KWY2
    Conserved Domains (1) summary
    cl23717
    Location:4 → 378
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  15. XM_015764211.3 → XP_015619697.1  3-hydroxyisobutyryl-CoA hydrolase 1 isoform X3

    UniProtKB/TrEMBL
    H2KWY2
    Conserved Domains (2) summary
    PRK05617
    Location:5 → 358
    PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
    cl23717
    Location:4 → 385
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

RNA

  1. XR_010738516.1 RNA Sequence

  2. XR_001542082.3 RNA Sequence

  3. XR_001542083.3 RNA Sequence

  4. XR_010738517.1 RNA Sequence

  5. XR_010738518.1 RNA Sequence

Nucleotide Protein
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