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LOC4351915 laccase-24-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351915, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351915
Gene description
laccase-24-like
Locus tag
OSNPB_120258700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LAC24; OsJ_17624; OsJ_016843
Expression
Restricted expression toward roots before flowering (RPKM 12.9) See more
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Genomic context

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See LOC4351915 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9020920..9024159)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (8960762..8964023)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene dnaJ protein ERDJ7-like Neighboring gene uncharacterized LOC136354520 Neighboring gene uncharacterized LOC136354521 Neighboring gene uncharacterized LOC136354522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-24
Names
Benzenediol:oxygen oxidoreductase 24
Diphenol oxidase 24
LOC_Os12g15680
Urishiol oxidase 24
NP_001410380.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423451.1 → NP_001410380.1  laccase-24 precursor

    Status: VALIDATED

    Source sequence(s)
    AK243030
    UniProtKB/TrEMBL
    A0A0P0Y8S2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    9020920..9024159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QUN2.1 GenPept UniProtKB/Swiss-Prot:Q2QUN2

Gene LinkOut

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Research Materials