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LOC4351908 serine carboxypeptidase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351908, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351908
Gene description
serine carboxypeptidase 1-like
Locus tag
OSNPB_120257000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CBP1
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Genomic context

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See LOC4351908 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (8887914..8893142, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (8829597..8834640, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277211 Neighboring gene pentatricopeptide repeat-containing protein At5g27110 Neighboring gene uncharacterized LOC107279727 Neighboring gene uncharacterized LOC112937480

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in secondary metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxypeptidase C 1
Names
Carboxypeptidase C
LOC_Os12g15470
serine carboxypeptidase I
NP_001410359.1
XP_015618180.1
XP_066162078.1
XP_066162079.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423430.1 → NP_001410359.1  carboxypeptidase C 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AK062220, CB658058, CF326764, CI577499
    UniProtKB/Swiss-Prot
    A0A0P0Y8R8, P37890, Q2QUQ3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    8887914..8893142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762694.3 → XP_015618180.1  carboxypeptidase C 1 isoform X2

    UniProtKB/TrEMBL
    B9GCM2
    Conserved Domains (1) summary
    pfam00450
    Location:47 → 508
    Peptidase_S10; Serine carboxypeptidase

  2. XM_066305982.1 → XP_066162079.1  carboxypeptidase C 1 isoform X3

  3. XM_066305981.1 → XP_066162078.1  carboxypeptidase C 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P37890.1 GenPept UniProtKB/Swiss-Prot:P37890

Gene LinkOut

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Molecular Biology Databases
Research Materials