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LOC4351857 exocyst complex component 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351857, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4351857
Gene description
exocyst complex component 5-like
Locus tag
OSNPB_120238100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SEC10
Expression
Ubiquitous expression in flowers (RPKM 19.2), leaves after flowering (RPKM 17.7) and 6 other tissues See more
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Genomic context

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See LOC4351857 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (7669998..7684067, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (7630405..7644289, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA5-like Neighboring gene transcription factor MYB3R-1-like Neighboring gene alpha-1,3-arabinosyltransferase XAT2-like Neighboring gene probable GPI-anchored adhesin-like protein PGA55

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exocyst complex component 5
Names
Exocyst complex component Sec10
LOC_Os12g13590
OSJNBb0001P17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423371.1 → NP_001410300.1  exocyst complex component 5

    Status: VALIDATED

    Source sequence(s)
    AK064983, CI022530, CI365629
    UniProtKB/Swiss-Prot
    Q0IP77, Q2QV94
    UniProtKB/TrEMBL
    A3CG69

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    7669998..7684067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QV94.1 GenPept UniProtKB/Swiss-Prot:Q2QV94

Gene LinkOut

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Molecular Biology Databases
Research Materials