LOC4351654 replication factor C subunit 2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4351654
Gene description: replication factor C subunit 2-like
Locus tag: OSNPB_120176500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: RFC2; OsRFC2; OsJ_35406
Expression: Ubiquitous expression in leaves before flowering (RPKM 23.4), flower buds (RPKM 22.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 12

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	12	NC_089046.1 (3902442..3906344)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	12	NC_029267.1 (3873310..3877273)

Chromosome 12 - NC_089046.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA clamp loader activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA repair	IEA Inferred from Electronic Annotation more info	PubMed
involved_in DNA-templated DNA replication	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of DNA replication factor C complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: replication factor C subunit 2

Names: Activator 1 subunit 2; LOC_Os12g07720; replication factor C 37 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423352.1 → NP_001410281.1 replication factor C subunit 2

Status: VALIDATED

Source sequence(s)

AK103718, CB652983

UniProtKB/Swiss-Prot

A0A0P0Y7I8, Q0IPQ0, Q9FXM3

UniProtKB/TrEMBL

A2ZIL4