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LOC4351610 long chain acyl-CoA synthetase 9, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351610, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4351610
Gene description
long chain acyl-CoA synthetase 9, chloroplastic
Locus tag
OSNPB_120168700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4351610 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3511513..3516816)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3483841..3489156)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351607 Neighboring gene chaperone protein dnaJ GFA2, mitochondrial Neighboring gene uncharacterized LOC4351611 Neighboring gene V-type proton ATPase 16 kDa proteolipid subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables long-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long chain acyl-CoA synthetase 9, chloroplastic
Names
Os12g0168700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    3511513..3516816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765261.3 → XP_015620747.1  long chain acyl-CoA synthetase 9, chloroplastic

    UniProtKB/TrEMBL
    B9GC24, Q0IPU0, Q2QX58
    Conserved Domains (1) summary
    PLN02387
    Location:1 → 698
    PLN02387; long-chain-fatty-acid-CoA ligase family protein
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials