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LOC4351445 heterogeneous nuclear ribonucleoprotein Q [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351445, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351445
Gene description
heterogeneous nuclear ribonucleoprotein Q
Locus tag
OSNPB_120136200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 11.6), flowers (RPKM 10.4) and 6 other tissues See more
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Genomic context

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See LOC4351445 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1780068..1784157)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1755519..1759694)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 41 Neighboring gene uncharacterized LOC4351443 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene uncharacterized LOC107279776 Neighboring gene scarecrow-like protein 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein Q
Names
Os12g0136200
putative RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    1780068..1784157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764244.3 → XP_015619730.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

    UniProtKB/TrEMBL
    Q0IQ94
    Conserved Domains (2) summary
    smart00360
    Location:158 → 227
    RRM; RNA recognition motif
    cl17169
    Location:326 → 404
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_066306310.1 → XP_066162407.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    UniProtKB/TrEMBL
    Q2QY16

  3. XM_015764248.3 → XP_015619734.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    UniProtKB/TrEMBL
    Q0IQ94, Q2QY16
    Conserved Domains (1) summary
    TIGR01648
    Location:107 → 426
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  4. XM_015764247.3 → XP_015619733.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    UniProtKB/TrEMBL
    Q0IQ94, Q2QY16
    Conserved Domains (1) summary
    TIGR01648
    Location:107 → 426
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
Nucleotide Protein
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