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LOC4351276 laccase-23-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351276, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351276
Gene description
laccase-23-like
Locus tag
OSNPB_120108000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LAC23
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Genomic context

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See LOC4351276 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (457568..462171)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (433952..439581)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase IMK3 Neighboring gene uncharacterized LOC107277363 Neighboring gene probable receptor-like protein kinase At5g18500 Neighboring gene uncharacterized LOC9268659

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-23
Names
Benzenediol:oxygen oxidoreductase 23
Diphenol oxidase 23
LOC_Os12g01730
Urishiol oxidase 23
NP_001410221.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423292.1 → NP_001410221.1  laccase-23 precursor

    Status: VALIDATED

    Source sequence(s)
    AK109523, CI125428, CI191329, CI223502
    UniProtKB/Swiss-Prot
    A0A0P0Y608, Q2QYS3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    457568..462171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QYS3.1 GenPept UniProtKB/Swiss-Prot:Q2QYS3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials