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LOC4351179 laccase-21-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351179, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4351179
Gene description
laccase-21-like
Locus tag
OSNPB_110696900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LAC21
Expression
Restricted expression toward roots before flowering (RPKM 3.7) See more
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Genomic context

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See LOC4351179 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (30473219..30475938, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28508502..28511163, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable beta-D-xylosidase 2 Neighboring gene uncharacterized LOC4351178 Neighboring gene uncharacterized LOC107279264 Neighboring gene uncharacterized LOC9271727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-21
Names
Benzenediol:oxygen oxidoreductase 21
Diphenol oxidase 21
LOC_Os11g47390
Urishiol oxidase 21
NP_001410214.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423285.1 → NP_001410214.1  laccase-21 precursor

    Status: VALIDATED

    Source sequence(s)
    AK241130
    UniProtKB/Swiss-Prot
    A0A0P0Y5P2, B7F8L2, Q2QZ80

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    30473219..30475938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QZ80.1 GenPept UniProtKB/Swiss-Prot:Q2QZ80

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials