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LOC4350869 small ribosomal subunit protein uS4y [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350869, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4350869
Gene description
small ribosomal subunit protein uS4y
Locus tag
OSNPB_110602600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4350869 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25133321..25136362)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23184389..23187562)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable tRNA-splicing endonuclease subunit Sen2 Neighboring gene small ribosomal subunit protein uS4y Neighboring gene uncharacterized LOC4350870 Neighboring gene F-box/kelch-repeat protein SKIP11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS4y
Names
40S ribosomal protein S9-2
Os11g0602600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    25133321..25136362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761487.3 → XP_015616973.1  small ribosomal subunit protein uS4y

    UniProtKB/TrEMBL
    A2ZFU3, B9G897, Q0IRR9, Q2R1J7, Q2R1J8
    Conserved Domains (1) summary
    PLN00189
    Location:1 → 183
    PLN00189; 40S ribosomal protein S9; Provisional
Nucleotide Protein
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