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LOC4350756 sialyltransferase-like protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350756, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4350756
Gene description
sialyltransferase-like protein 5
Locus tag
OSNPB_110572400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
STLP5; OsSTLP5; OsJ_34319
Expression
Ubiquitous expression in flowers (RPKM 10.8), flower buds (RPKM 9.6) and 6 other tissues See more
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Genomic context

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See LOC4350756 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23410787..23414739)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21475671..21479693)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO70C2 Neighboring gene probable disease resistance protein At5g63020 Neighboring gene E3 ubiquitin-protein ligase RHF2A Neighboring gene prolycopene isomerase 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pollen germination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pollen tube growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sialyltransferase-like protein 5
Names
LOC_Os11g36420

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423422.1 → NP_001410351.1  sialyltransferase-like protein 5

    Status: VALIDATED

    Source sequence(s)
    AK101277, CI089357, CI613591, CI659635
    UniProtKB/Swiss-Prot
    A0A0P0Y3P1, Q2R2B1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    23410787..23414739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2R2B1.1 GenPept UniProtKB/Swiss-Prot:Q2R2B1

Gene LinkOut

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Molecular Biology Databases
Research Materials