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LOC4350197 tubulin alpha-2 chain-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350197, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4350197
Gene description
tubulin alpha-2 chain-like
Locus tag
OSNPB_110247300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TID1; TubA
Expression
Broad expression in flowers (RPKM 1644.0), flower buds (RPKM 1106.0) and 5 other tissues See more
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Genomic context

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See LOC4350197 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8393437..8396297)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7960499..7963293)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene uncharacterized LOC4350195 Neighboring gene uncharacterized LOC4350198 Neighboring gene uncharacterized LOC4350199

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. A dominant mutation of TWISTED DWARF 1 encoding an alpha-tubulin protein causes severe dwarfism and right helical growth in rice. Sunohara H, et al. Genes Genet Syst, 2009 Jun. PMID 19745569
  2. Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development. Qin X, et al. Biochim Biophys Acta, 1997 Oct 9. PMID 9375785
  3. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin alpha-2 chain
Names
LOC_Os11g14220
alfa-tubulin
alpha-tublin
alpha-tubulin
NP_001391388.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404459.1 → NP_001391388.1  tubulin alpha-2 chain

    Status: VALIDATED

    Source sequence(s)
    AK288787, AU183246, BP184710, CF276489, CI381567
    UniProtKB/Swiss-Prot
    Q43606, Q53M52
    UniProtKB/TrEMBL
    A2ZD27, A3CA68, Q0ITK1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    8393437..8396297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q53M52.1 GenPept UniProtKB/Swiss-Prot:Q53M52

Gene LinkOut

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Molecular Biology Databases
Research Materials