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LOC4350151 probable sucrose-phosphate synthase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350151, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4350151
Gene description
probable sucrose-phosphate synthase 5
Locus tag
OSNPB_110236100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 22.4), flower buds (RPKM 8.3) and 5 other tissues See more
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Genomic context

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See LOC4350151 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (7659999..7667613, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7255802..7263167, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278389 Neighboring gene glycerophosphodiester phosphodiesterase GDPD4 Neighboring gene uncharacterized LOC112936913 Neighboring gene mitochondrial import receptor subunit TOM9-2 Neighboring gene disease resistance protein Pik-2-like Neighboring gene uncharacterized LOC4350155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable sucrose-phosphate synthase 5
Names
Os11g0236100
Os11g0236200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    7659999..7667613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762188.3 → XP_015617674.1  probable sucrose-phosphate synthase 5 isoform X1

    UniProtKB/TrEMBL
    B8BJU1
    Conserved Domains (2) summary
    cd03800
    Location:209 → 726
    GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
    TIGR02468
    Location:1 → 1091
    sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

  2. XM_015762189.3 → XP_015617675.1  probable sucrose-phosphate synthase 5 isoform X2

    UniProtKB/Swiss-Prot
    Q0ITN3, Q53JI9, Q53NB0
    UniProtKB/TrEMBL
    A3CA11
    Conserved Domains (3) summary
    cd03800
    Location:118 → 635
    GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
    TIGR02472
    Location:117 → 635
    sucr_P_syn_N; sucrose-phosphate synthase, putative, glycosyltransferase domain
    pfam05116
    Location:805 → 978
    S6PP; Sucrose-6F-phosphate phosphohydrolase
Nucleotide Protein
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