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LOC4349640 probable galacturonosyltransferase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349640, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4349640
Gene description
probable galacturonosyltransferase 7
Locus tag
OSNPB_110124900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 3.1), flower buds (RPKM 2.2) and 5 other tissues See more
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Genomic context

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See LOC4349640 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1180337..1185712, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1136049..1141660, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein SCARECROW 1-like Neighboring gene calcium uniporter protein 6, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At4g18975, chloroplastic Neighboring gene uncharacterized LOC112936864 Neighboring gene glutathione transferase GST 23-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 7
Names
Os11g0124900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    1180337..1185712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760219.3 → XP_015615705.1  probable galacturonosyltransferase 7 isoform X2

    UniProtKB/TrEMBL
    A0A8J8XGS5, B8BIT8, B9G953, Q0IV01, Q2RB54
    Conserved Domains (1) summary
    PLN02769
    Location:1 → 642
    PLN02769; Probable galacturonosyltransferase

  2. XM_015760218.3 → XP_015615704.1  probable galacturonosyltransferase 7 isoform X1

    UniProtKB/TrEMBL
    B8BIT8
    Conserved Domains (1) summary
    PLN02769
    Location:1 → 643
    PLN02769; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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