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LOC4349290 carotene epsilon-monooxygenase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349290, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4349290
Gene description
carotene epsilon-monooxygenase, chloroplastic
Locus tag
OSNPB_100546600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 47.4), roots after flowering (RPKM 19.4) and 4 other tissues See more
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Genomic context

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See LOC4349290 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22060723..22065727)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21368351..21373396)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene syndetin Neighboring gene cyclin-dependent protein kinase inhibitor SMR1-like Neighboring gene uncharacterized LOC107278998 Neighboring gene probable E3 ubiquitin-protein ligase ATL45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotene epsilon-monooxygenase, chloroplastic
Names
Os10g0546600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    22060723..22065727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757537.3 → XP_015613023.1  carotene epsilon-monooxygenase, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8XZA4, B8BI40, B9G6V1, Q0IVY4, Q336V3
    Conserved Domains (1) summary
    PLN02936
    Location:61 → 558
    PLN02936; epsilon-ring hydroxylase

  2. XM_026020959.2 → XP_025876744.1  carotene epsilon-monooxygenase, chloroplastic

    UniProtKB/TrEMBL
    A0A8J8XZA4, B8BI40, B9G6V1, Q0IVY4, Q336V3
    Conserved Domains (1) summary
    PLN02936
    Location:61 → 558
    PLN02936; epsilon-ring hydroxylase

RNA

  1. XR_001540306.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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