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LOC4349116 electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349116, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4349116
Gene description
electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like
Locus tag
OSNPB_100516300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ETF-QO
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Genomic context

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See LOC4349116 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20599659..20605154)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19908399..19913854)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene glycine cleavage system H protein, mitochondrial Neighboring gene salt tolerance receptor-like cytoplasmic kinase 1 Neighboring gene protein CDI Neighboring gene uncharacterized LOC107278116 Neighboring gene uncharacterized LOC136353660

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables electron-transferring-flavoprotein dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in electron transport chain IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial
Names
ETF-ubiquinone oxidoreductase
LOC_Os10g37210
OSJNBa0076F20.3
NP_001410016.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423087.1 → NP_001410016.1  electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AU032985, CB655422, CB663379, CB665636, CB671843, CI393881, CI567785, CI629914
    UniProtKB/Swiss-Prot
    Q0IWD9, Q337B8, Q94HZ6

RNA

  1. NR_186722.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CB655422, CB663379, CB665636, CB671843, CI393881, CI567785, CI629914

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    20599659..20605154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q337B8.1 GenPept UniProtKB/Swiss-Prot:Q337B8

Gene LinkOut

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Molecular Biology Databases
Research Materials