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LOC4349011 COBRA-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349011, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4349011
Gene description
COBRA-like protein 4
Locus tag
OSNPB_100497700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BC1L9; OsJ_32037
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Genomic context

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See LOC4349011 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19668496..19671549)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18975994..18978991)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein Rf1, mitochondrial Neighboring gene probable receptor-like protein kinase At2g42960 Neighboring gene probable prolyl 4-hydroxylase 3 Neighboring gene lanC-like protein GCL2 Neighboring gene uncharacterized LOC4349014

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellulose microfibril organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cOBRA-like protein 4
Names
LOC_Os10g35460
OSJNBa0017E08.5
Protein BRITTLE CULM1-like 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423074.1 → NP_001410003.1  cOBRA-like protein 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AK071225
    UniProtKB/Swiss-Prot
    A3C651, Q0IWP0, Q7XD23, Q8W3E8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    19668496..19671549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W3E8.1 GenPept UniProtKB/Swiss-Prot:Q8W3E8

Gene LinkOut

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Molecular Biology Databases
Research Materials