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LOC4348849 peroxisome biogenesis protein 12 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348849, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348849
Gene description
peroxisome biogenesis protein 12
Locus tag
OSNPB_100467200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4348849 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17916927..17921848)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17250735..17255665)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348847 Neighboring gene uncharacterized LOC4348848 Neighboring gene eukaryotic translation initiation factor-like Neighboring gene cellulose synthase A catalytic subunit 7 [UDP-forming]-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of peroxisomal importomer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome biogenesis protein 12
Names
Os10g0467200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    17916927..17921848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757410.3 → XP_015612896.1  peroxisome biogenesis protein 12

    UniProtKB/TrEMBL
    A0A8J8Y1N5, B8BHD5, B9G659, Q0IX42, Q337M1
    Conserved Domains (2) summary
    cd16451
    Location:340 → 381
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:20 → 304
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
Nucleotide Protein
Heading Accession and Version

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