U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4348810 xyloglucan galactosyltransferase KATAMARI1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348810, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4348810
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Locus tag
OSNPB_100459600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4348810 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17559233..17561514)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16892775..16894858)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC136353589 Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC107279234 Neighboring gene uncharacterized LOC107279235

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog
Names
Os10g0459600

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    17559233..17561514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758438.3 → XP_015613924.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    B9G641, Q0IX81, Q8LMZ1
    Conserved Domains (1) summary
    pfam03016
    Location:157 → 496
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials