U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4348623 glutathione reductase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348623, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4348623
Gene description
glutathione reductase, chloroplastic
Locus tag
OSNPB_100415300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 7.8), mature seeds (RPKM 5.1) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4348623 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (15167177..15171630, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (14505503..14510025, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable myosin-binding protein 5 Neighboring gene GABA transporter 1 Neighboring gene exocyst complex component SEC15A Neighboring gene uncharacterized LOC136353627 Neighboring gene uncharacterized LOC4348624 Neighboring gene acylamino-acid-releasing enzyme 1-like Neighboring gene uncharacterized LOC136353628

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutathione-disulfide reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutathione metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glutathione reductase, chloroplastic
Names
Os10g0415300

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    15167177..15171630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757646.3 → XP_015613132.1  glutathione reductase, chloroplastic

    UniProtKB/TrEMBL
    B8BGT8, B9G5R2
    Conserved Domains (1) summary
    PLN02546
    Location:3 → 566
    PLN02546; glutathione reductase

  2. XM_015757647.3 → XP_015613133.1  glutathione reductase, chloroplastic

    UniProtKB/TrEMBL
    B8BGT8, B9G5R2
    Conserved Domains (1) summary
    PLN02546
    Location:3 → 566
    PLN02546; glutathione reductase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials