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LOC4348464 glutamate--tRNA ligase, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348464, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348464
Gene description
glutamate--tRNA ligase, cytoplasmic
Locus tag
OSNPB_100369000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4348464 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (12183948..12187796, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11581403..11585302, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD96 family Neighboring gene uncharacterized LOC9271400 Neighboring gene small nucleolar RNA SNORD96 family Neighboring gene uncharacterized LOC136353647 Neighboring gene uncharacterized LOC107279145 Neighboring gene putative yippee-like protein Os10g0369500

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of methionyl glutamyl tRNA synthetase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate--tRNA ligase, cytoplasmic
Names
Os10g0369000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    12183948..12187796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758741.3 → XP_015614227.1  glutamate--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A2Z6H7, A3C430, Q0IY50, Q8S5M6
    Conserved Domains (1) summary
    PLN02907
    Location:1 → 713
    PLN02907; glutamate-tRNA ligase
Nucleotide Protein
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