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LOC4348435 tRNA (guanine(26)-N(2))-dimethyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348435, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4348435
Gene description
tRNA (guanine(26)-N(2))-dimethyltransferase 1
Locus tag
OSNPB_100357800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 15.2), flower buds (RPKM 7.3) and 5 other tissues See more
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Genomic context

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See LOC4348435 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (11518022..11526129)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (10931974..10940307)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936648 Neighboring gene uncharacterized LOC4348434 Neighboring gene small nucleolar RNA Z256 Neighboring gene disease resistance protein RPM1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine(10)-N2)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(26)-N(2))-dimethyltransferase 1
Names
Os10g0357800
probable tRNA (guanine(26)-N(2))-dimethyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    11518022..11526129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026020839.2 → XP_025876624.2  tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X3

  2. XM_015759379.3 → XP_015614865.2  tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X1

  3. XM_015759380.3 → XP_015614866.2  tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X2

  4. XM_026020840.2 → XP_025876625.1  tRNA (guanine(26)-N(2))-dimethyltransferase 1 isoform X4

    UniProtKB/TrEMBL
    Q8W2U5
    Conserved Domains (1) summary
    cl17173
    Location:1 → 280
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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