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LOC4348305 ATP synthase subunit gamma, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348305, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4348305
Gene description
ATP synthase subunit gamma, mitochondrial
Locus tag
OSNPB_100320400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 210.6), flower buds (RPKM 205.2) and 6 other tissues See more
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Genomic context

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See LOC4348305 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (9157818..9163075)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (8691844..8697131)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266737 Neighboring gene flavonoid 3'-monooxygenase CYP75B3-like Neighboring gene glycine-rich RNA-binding protein 10 Neighboring gene uncharacterized LOC136353519

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit gamma, mitochondrial
Names
ATP synthase gamma chain
Os10g0320400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    9157818..9163075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759391.3 → XP_015614877.1  ATP synthase subunit gamma, mitochondrial

    UniProtKB/TrEMBL
    B9G7Z9, Q0IYG2, Q7G3Y4
    Conserved Domains (1) summary
    cl00365
    Location:46 → 322
    F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit
Nucleotide Protein
Heading Accession and Version

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