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LOC4347769 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347769, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4347769
Gene description
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9
Locus tag
OSNPB_090547500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LOGL9
Expression
Biased expression in leaves after flowering (RPKM 24.7), roots before flowering (RPKM 24.2) and 2 other tissues See more
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Genomic context

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See LOC4347769 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26086454..26088788)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21642712..21644833)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351907 Neighboring gene protein ALTERED PHOSPHATE STARVATION RESPONSE 1 Neighboring gene uncharacterized LOC136351653 Neighboring gene F-box/FBD/LRR-repeat protein At5g22660

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1. Jang SJ, et al. Mol Cells, 2012 Sep. PMID 22965749, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The mutation of lysine decarboxylase-like 1 protein conferred an oxidative stress-tolerant phenotype.
    Title: Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9
Names
LOC_Os09g37540
OSJNBa0038K02.28
Protein LONELY GUY-like 9
NP_001409862.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422933.1 → NP_001409862.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9

    Status: VALIDATED

    Source sequence(s)
    AK062595, AP014965, CI251858, CI261278, CI295549
    UniProtKB/Swiss-Prot
    A0A0P0XR83, B7E7M8, Q651P9
    UniProtKB/TrEMBL
    A2Z3Q9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    26086454..26088788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B7E7M8.1 GenPept UniProtKB/Swiss-Prot:B7E7M8

Gene LinkOut

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Molecular Biology Databases
Research Materials